Easy. There's a parameter called "trigger phase" on the LFO's edit menu. Self explanatory, works exactly like "phase init" does for the oscillators.
Don't expect it to start in the same place for each note if your LFO is set to mono, though. In that case, you'd really just be selecting the initial starting position of the cycle, but the cycle would not restart with each key pressed. It only does that when it's set to Poly mode or in Env Mode (one shot).
The Virus can receive Midi Clock information from your host as long as the settings are right both with your Virus (check manual) and your host (same). Those options within the DAW are usually somewhere on the Midi menu on the preferences. This will allow you to sync everything time-based with the tempo of the song you're writing of course.
Cheers
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