Correct me if Im wrong but I think your problem is that you are recording the way you would with an ordinary or "old school" synth which you would do via analog inputs/outputs and cubases record button, if you are using USB you need to solo the track you wish to export set the locators and use cubase's export->audio mixdown option (i have this on shortcut key
'E') also keep in mind you need to set your export option to "real time" to avoid any unwanted artifacts.
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